A normalization method for Copy Number Aberration in cancer samples

Bioconductor version: Release (2.14)

Performs ratio, GC content correction and normalization of data obtained using low coverage (one read every 100-10,000 bp) high troughput sequencing. It performs a "discrete" normalization looking for the ploidy of the genome. It will also provide tumour content if at least two ploidy states can be found.

Author: Stefano Berri <sberri at>, Henry M. Wood <H.M.Wood at>, Arief Gusnanto <a.gusnanto at>

Maintainer: Stefano Berri <sberri at>

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PDF CNAnorm.pdf
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biocViews Cancer, CopyNumberVariation, Lung, Sequencing, Software
Version 1.10.0
In Bioconductor since BioC 2.9 (R-2.14)
License GPL-2
Depends R (>= 2.10.1), methods
Imports DNAcopy
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source CNAnorm_1.10.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CNAnorm_1.10.0.tgz
Mac OS X 10.9 (Mavericks)
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