stageR
This is the released version of stageR; for the devel version, see stageR.
All Bioconductor versions of stageR
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6
stageR: stage-wise analysis of high throughput gene expression data in R
Bioconductor version: 3.23 · Package version: 1.34.0
The stageR package allows automated stage-wise analysis of high-throughput gene expression data. The method is published in Genome Biology at https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1277-0
Author: Koen Van den Berge and Lieven Clement
Maintainer: Koen Van den Berge <koen.vdberge at gmail.com>
Citation
From within R, enter citation("stageR"):
Koen Van den Berge and Lieven Clement. stageR: stageR: stage-wise analysis of high throughput gene expression data in R. doi:10.18129/B9.bioc.stageR, R package version 1.34.0, https://bioconductor.org/packages/stageR.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("stageR")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.34.0 |
| License | GNU General Public License version 3 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.6 (R-3.4) (8 years) |
| Downloads rank | 605 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Software, StatisticalMethod |
| Package Short Url | https://bioconductor.org/packages/stageR/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("stageR")| stageR: stage-wise analysis of high-throughput gene expression data in R | HTML | R Script |
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | stageR_1.34.0.tar.gz |
| Windows binary (x86_64) | stageR_1.34.0.zip |
| macOS binary (arm64) | stageR_1.34.0.tgz |
| macOS binary (x86_64) | stageR_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/stageR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/stageR |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.23 | Source Archive |