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leeBamViews

leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009


Bioconductor version: Release (3.18)

data from PMID 19096707; prototype for managing multiple NGS samples

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("leeBamViews")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("leeBamViews")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("leeBamViews")
managing multiple NGS samples with bamViews PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, RNASeqData, SNPData, Saccharomyces_cerevisiae_Data, SequencingData
Version 1.38.0
License Artistic 2.0
Depends R (>= 2.15.0), Biobase, Rsamtools(>= 0.1.50), BSgenome
Imports GenomicRanges, GenomicAlignments, methods, S4Vectors, parallel, IRanges
System Requirements
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Suggests biomaRt, org.Sc.sgd.db, edgeR
Linking To
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Depends On Me
Imports Me
Suggests Me EDASeq
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package leeBamViews_1.38.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/leeBamViews
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/leeBamViews
Package Short Url https://bioconductor.org/packages/leeBamViews/
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