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gageData

Auxillary data for gage package


Bioconductor version: Release (3.18)

This is a supportive data package for the software package, gage. However, the data supplied here are also useful for gene set or pathway analysis or microarray data analysis in general. In this package, we provide two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and BMP6 (originally published as an demo dataset for GAGE, also registered as GSE13604 in GEO). This package also includes commonly used gene set data based on KEGG pathways and GO terms for major research species, including human, mouse, rat and budding yeast. Mapping data between common gene IDs for budding yeast are also included.

Author: Weijun Luo

Maintainer: Weijun Luo <luo_weijun at yahoo.com>

Citation (from within R, enter citation("gageData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gageData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews BreastCancerData, CancerData, ExperimentData, GEO, MicroarrayData, StemCell
Version 2.40.0
License GPL (>=2.0)
Depends R (>= 2.10)
Imports
System Requirements
URL
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Suggests gage, pathview, genefilter
Linking To
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Depends On Me
Imports Me
Suggests Me gage
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gageData_2.40.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/gageData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gageData
Package Short Url https://bioconductor.org/packages/gageData/
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