RTCGA.rnaseq
Rna-seq datasets from The Cancer Genome Atlas Project
Bioconductor version: Release (3.19)
Package provides rna-seq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Rna-seq data format is explained here https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Data source is illumina hiseq Level 3 RSEM normalized expression data. Data from 2015-11-01 snapshot.
Author: Marcin Kosinski <m.p.kosinski at gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>
citation("RTCGA.rnaseq")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RTCGA.rnaseq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RTCGA.rnaseq")
Using RTCGA to download RNAseq data as included in RTCGA.rnaseq | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation Data, ExperimentData |
Version | 20151101.34.0 |
License | GPL-2 |
Depends | R (>= 3.2.0), RTCGA |
Imports | |
System Requirements | |
URL | |
Bug Reports | https://github.com/RTCGA/RTCGA/issues |
See More
Suggests | knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | RTCGA, TDbasedUFEadv, FSelectorRcpp |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | RTCGA.rnaseq_20151101.34.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/RTCGA.rnaseq |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RTCGA.rnaseq |
Package Short Url | https://bioconductor.org/packages/RTCGA.rnaseq/ |
Package Downloads Report | Download Stats |