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RTCGA.rnaseq

This is the released version of RTCGA.rnaseq; for the devel version, see RTCGA.rnaseq.

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3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

Rna-seq datasets from The Cancer Genome Atlas Project

DOI: 10.18129/B9.bioc.RTCGA.rnaseq

Bioconductor version: Release (3.23)

Package provides rna-seq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Rna-seq data format is explained here https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Data source is illumina hiseq Level 3 RSEM normalized expression data. Data from 2015-11-01 snapshot.

Author: Marcin Kosinski <m.p.kosinski at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.rnaseq")):

Marcin Kosinski. RTCGA.rnaseq: Rna-seq datasets from The Cancer Genome Atlas Project. doi:10.18129/B9.bioc.RTCGA.rnaseq, R package version 20151101.42.0, https://bioconductor.org/packages/RTCGA.rnaseq.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RTCGA.rnaseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.rnaseq")

Details

Package Archives

Follow Installation instructions to use this package in your R session.