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RNAseqData.HNRNPC.bam.chr14

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells


Bioconductor version: Release (3.18)

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("RNAseqData.HNRNPC.bam.chr14")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAseqData.HNRNPC.bam.chr14")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData
Version 0.40.0
License LGPL
Depends
Imports
System Requirements
URL http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/
See More
Suggests GenomicAlignments, BiocManager
Linking To
Enhances
Depends On Me sequencing
Imports Me
Suggests Me BiocParallel, GenomicAlignments, GenomicFiles, GenomicRanges, roar, Rsamtools, SplicingGraphs
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAseqData.HNRNPC.bam.chr14_0.40.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAseqData.HNRNPC.bam.chr14
Package Short Url https://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/
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