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COHCAPanno

Annotations for City of Hope CpG Island Analysis Pipeline


Bioconductor version: Release (3.18)

Provides genomic location, nearby CpG island and nearby gene information for common Illumina methylation array platforms

Author: Charles Warden

Maintainer: Charles Warden <cwarden45 at gmail.com>

Citation (from within R, enter citation("COHCAPanno")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("COHCAPanno")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("COHCAPanno")
COHCAPanno Vignette PDF R Script
Reference Manual PDF

Details

biocViews ArrayExpress, CpGIslandData, ExperimentData, GEO, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version 1.38.0
License GPL-3
Depends R (>= 2.10)
Imports
System Requirements
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Depends On Me COHCAP
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package COHCAPanno_1.38.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/COHCAPanno
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/COHCAPanno
Package Short Url https://bioconductor.org/packages/COHCAPanno/
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