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targetscan.Hs.eg.db

TargetScan miRNA target predictions for human


Bioconductor version: Release (3.18)

TargetScan miRNA target predictions for human assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.

Author: Gabor Csardi <Gabor.Csardi at unil.ch>

Maintainer: James F. Reid <james.reid at ifom-ieo-campus.it>

Citation (from within R, enter citation("targetscan.Hs.eg.db")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("targetscan.Hs.eg.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
LICENSE Text

Details

biocViews AnnotationData, FunctionalAnnotation
Version 0.6.1
License file LICENSE
Depends R (>= 2.7.0), methods, AnnotationDbi(>= 1.18.3)
Imports methods, AnnotationDbi
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package targetscan.Hs.eg.db_0.6.1.tar.gz
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Package Short Url https://bioconductor.org/packages/targetscan.Hs.eg.db/
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