To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("isomiRs")

In most cases, you don't need to download the package archive at all.

isomiRs

 

   

Analyze isomiRs and miRNAs from small RNA-seq

Bioconductor version: Release (3.5)

Characterization of miRNAs and isomiRs, clustering and differential expression.

Author: Lorena Pantano, Georgia Escaramis

Maintainer: Lorena Pantano <lorena.pantano at gmail.com>

Citation (from within R, enter citation("isomiRs")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("isomiRs")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("isomiRs")

 

PDF R Script isomiRs
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Clustering, DifferentialExpression, RNASeq, Software, miRNA
Version 1.4.0
In Bioconductor since BioC 3.3 (R-3.3) (1 year)
License MIT + file LICENSE
Depends R (>= 3.2), DiscriMiner, IRanges, S4Vectors(>= 0.9.25), GenomicRanges, SummarizedExperiment(>= 1.1.6)
Imports BiocGenerics(>= 0.7.5), DESeq2, reshape, tidyr, plyr, readr, dplyr, RColorBrewer, gplots, methods, ggplot2, gtools, gridExtra, grid, GGally
LinkingTo
Suggests knitr, RUnit, org.Mm.eg.db, cluster, clusterProfiler, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source isomiRs_1.4.0.tar.gz
Windows Binary isomiRs_1.4.0.zip
Mac OS X 10.11 (El Capitan) isomiRs_1.4.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/isomiRs/tree/release-3.5
Package Short Url http://bioconductor.org/packages/isomiRs/
Package Downloads Report Download Stats

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