isomiRs
Analyze isomiRs and miRNAs from small RNA-seq
Bioconductor version: Release (3.19)
Characterization of miRNAs and isomiRs, clustering and differential expression.
Author: Lorena Pantano [aut, cre], Georgia Escaramis [aut] (CIBERESP - CIBER Epidemiologia y Salud Publica)
Maintainer: Lorena Pantano <lorena.pantano at gmail.com>
Citation (from within R, enter
citation("isomiRs")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("isomiRs")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("isomiRs")
miRNA and isomiR analysis | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Clustering, DifferentialExpression, ImmunoOncology, RNASeq, Software, miRNA |
Version | 1.32.1 |
In Bioconductor since | BioC 3.3 (R-3.3) (8.5 years) |
License | MIT + file LICENSE |
Depends | R (>= 4.4), SummarizedExperiment |
Imports | AnnotationDbi, BiocGenerics, Biobase, broom, cluster, cowplot, DEGreport, DESeq2, IRanges, dplyr, GenomicRanges, gplots, ggplot2, gtools, gridExtra, grid, grDevices, graphics, GGally, limma, methods, RColorBrewer, readr, reshape, rlang, stats, stringr, S4Vectors, tidyr, tibble |
System Requirements | |
URL | |
Bug Reports | https://github.com/lpantano/isomiRs/issues |
See More
Suggests | knitr, rmarkdown, org.Mm.eg.db, targetscan.Hs.eg.db, pheatmap, BiocStyle, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | isomiRs_1.32.1.tar.gz |
Windows Binary | isomiRs_1.32.1.zip (64-bit only) |
macOS Binary (x86_64) | isomiRs_1.32.1.tgz |
macOS Binary (arm64) | isomiRs_1.32.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/isomiRs |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/isomiRs |
Bioc Package Browser | https://code.bioconductor.org/browse/isomiRs/ |
Package Short Url | https://bioconductor.org/packages/isomiRs/ |
Package Downloads Report | Download Stats |