tracktables

This is the released version of tracktables; for the devel version, see tracktables.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Build IGV tracks and HTML reports

Bioconductor version: Release (3.23)

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

Author: Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang

Maintainer: Tom Carroll <tc.infomatics at gmail.com>

Citation (from within R, enter citation("tracktables")):

Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang. tracktables: Build IGV tracks and HTML reports. doi:10.18129/B9.bioc.tracktables, R package version 1.46.0, https://bioconductor.org/packages/tracktables.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tracktables")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tracktables")

Creating IGV HTML reports with tracktables	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ReportWriting, Sequencing, Software
Version	1.46.0
In Bioconductor since	BioC 3.0 (R-3.1) (12 years)
License	GPL (>= 3)
Depends	R (>= 3.5.0)
Imports	IRanges, GenomicRanges, XVector, Rsamtools, XML, tractor.base, stringr, RColorBrewer, methods
System Requirements
URL

Suggests	knitr, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tracktables_1.46.0.tar.gz
Windows Binary (x86_64)	tracktables_1.46.0.zip
macOS Binary (big-sur-x86_64)	tracktables_1.46.0.tgz
macOS Binary (sonoma-arm64)	tracktables_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tracktables
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tracktables
Package Short Url	https://bioconductor.org/packages/tracktables/
Package Downloads Report	Download Stats