XVector
Foundation of external vector representation and manipulation in Bioconductor
Bioconductor version: 3.23 · Package version: 0.52.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Provides memory efficient S4 classes for storing sequences "externally" (e.g. behind an R external pointer, or on disk).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("XVector")Details
| Maintainer | Hervé Pagès <hpages.on.github@gmail.com> |
| Author | Hervé Pagès and Patrick Aboyoun |
| License | Artistic-2.0 |
| URL | https://bioconductor.org/packages/XVector |
| Bug Reports | https://github.com/Bioconductor/XVector/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataRepresentation, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/XVector/ |
Citation
From within R, enter citation("XVector"):
Hervé Pagès and Patrick Aboyoun. XVector: Foundation of external vector representation and manipulation in Bioconductor. doi:10.18129/B9.bioc.XVector, R package version 0.52.0, https://bioconductor.org/packages/XVector.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | XVector_0.52.0.tar.gz |
| Windows binary (x86_64) | XVector_0.52.0.zip |
| macOS binary (arm64) | XVector_0.52.0.tgz |
| macOS binary (x86_64) | XVector_0.52.0.tgz |
Dependencies
Depends: R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), S4Vectors (>= 0.27.12), IRanges (>= 2.43.8)
Imports: methods, utils, stats, tools, BiocGenerics, S4Vectors, IRanges
Suggests: Biostrings, drosophila2probe, RUnit
Reverse dependencies
Depends On Me (2): Biostrings, triplex
Imports Me (33): Bioc.gff, BSgenome, ChIPsim, CNEr, compEpiTools, crisprScore, CRISPRseek, dada2, DECIPHER, gcrma, GenomAutomorphism, GenomicFeatures, Gviz, HiLDA, IONiseR, IsoformSwitchAnalyzeR, kebabs, MatrixRider, MiscMetabar, Modstrings, monaLisa, ProteoDisco, R453Plus1Toolbox, ribosomeProfilingQC, Rsamtools, rtracklayer, SparseArray, Structstrings, TFBSTools, tracktables, tRNA, tRNAscanImport, VariantAnnotation
Suggests Me (7): CNVMetrics, fastRanges, inDAGO, IRanges, IWTomics, LOLA, musicatk
Links To Me (15): Bioc.gff, Biostrings, CNEr, DECIPHER, kebabs, MatrixRider, posDemux, pwalign, Rsamtools, rtracklayer, ShortRead, SparseArray, triplex, VariantAnnotation, VariantFiltering