switchde

Switch-like differential expression across single-cell trajectories


Bioconductor version: Release (3.19)

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Author: Kieran Campbell [aut, cre]

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("switchde")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("switchde")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchde")
An overview of the switchde package HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Regression, SingleCell, Software, Transcriptomics
Version 1.30.0
In Bioconductor since BioC 3.4 (R-3.3) (8 years)
License GPL (>= 2)
Depends R (>= 3.4), SingleCellExperiment
Imports SummarizedExperiment, dplyr, ggplot2, methods, stats
System Requirements
URL https://github.com/kieranrcampbell/switchde
Bug Reports https://github.com/kieranrcampbell/switchde
See More
Suggests knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package switchde_1.30.0.tar.gz
Windows Binary (x86_64) switchde_1.30.0.zip
macOS Binary (x86_64) switchde_1.30.0.tgz
macOS Binary (arm64) switchde_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/switchde
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/switchde
Bioc Package Browser https://code.bioconductor.org/browse/switchde/
Package Short Url https://bioconductor.org/packages/switchde/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.19 Source Archive