switchde

This is the development version of switchde; for the stable release version, see switchde.

Switch-like differential expression across single-cell trajectories

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("switchde")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchde")

An overview of the switchde package	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Regression, SingleCell, Software, Transcriptomics
Version	1.35.0
In Bioconductor since	BioC 3.4 (R-3.3) (9 years)
License	GPL (>= 2)
Depends	R (>= 3.4), SingleCellExperiment
Imports	SummarizedExperiment, dplyr, ggplot2, methods, stats
System Requirements
URL	https://github.com/kieranrcampbell/switchde
Bug Reports	https://github.com/kieranrcampbell/switchde

See More

Suggests	knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	switchde_1.35.0.tar.gz
Windows Binary (x86_64)	switchde_1.35.0.zip
macOS Binary (x86_64)	switchde_1.35.0.tgz
macOS Binary (arm64)	switchde_1.35.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/switchde
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/switchde
Bioc Package Browser	https://code.bioconductor.org/browse/switchde/
Package Short Url	https://bioconductor.org/packages/switchde/
Package Downloads Report	Download Stats