survtype

DOI: 10.18129/B9.bioc.survtype    

Subtype Identification with Survival Data

Bioconductor version: Release (3.9)

Subtypes are defined as groups of samples that have distinct molecular and clinical features. Genomic data can be analyzed for discovering patient subtypes, associated with clinical data, especially for survival information. This package is aimed to identify subtypes that are both clinically relevant and biologically meaningful.

Author: Dongmin Jung

Maintainer: Dongmin Jung <dmdmjung at gmail.com>

Citation (from within R, enter citation("survtype")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("survtype")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("survtype")

 

HTML R Script survtype
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, Coverage, GeneExpression, Sequencing, Software, StatisticalMethod, Survival
Version 1.0.0
In Bioconductor since BioC 3.9 (R-3.6) (< 6 months)
License Artistic-2.0
Depends SummarizedExperiment, pheatmap, survival, survminer, clustvarsel, stats, utils
Imports
LinkingTo
Suggests maftools, scales, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package survtype_1.0.0.tar.gz
Windows Binary survtype_1.0.0.zip
Mac OS X 10.11 (El Capitan) survtype_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/survtype
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/survtype
Package Short Url http://bioconductor.org/packages/survtype/
Package Downloads Report Download Stats

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