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survtype

This is the development version of survtype; for the stable release version, see survtype.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

Subtype Identification with Survival Data


Bioconductor version: Development (3.24)

Subtypes are defined as groups of samples that have distinct molecular and clinical features. Genomic data can be analyzed for discovering patient subtypes, associated with clinical data, especially for survival information. This package is aimed to identify subtypes that are both clinically relevant and biologically meaningful.

Author: Dongmin Jung

Maintainer: Dongmin Jung <dmdmjung at gmail.com>

Citation (from within R, enter citation("survtype")):

Dongmin Jung. survtype: Subtype Identification with Survival Data. doi:10.18129/B9.bioc.survtype, R package version 1.29.0, https://bioconductor.org/packages/survtype.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("survtype")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("survtype")
survtype HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews Clustering, Coverage, GeneExpression, Sequencing, Software, StatisticalMethod, Survival
Version1.29.0
In Bioconductor sinceBioC 3.9 (R-3.6) (7.5 years)
License Artistic-2.0
Depends SummarizedExperiment, pheatmap, survival, survminer, clustvarsel, stats, utils
Imports
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Suggests maftools, scales, knitr, rmarkdown
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Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package survtype_1.29.0.tar.gz
Windows Binary (x86_64) survtype_1.29.0.zip
macOS Binary (big-sur-x86_64) survtype_1.29.0.tgz
macOS Binary (sonoma-arm64) survtype_1.29.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/survtype
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/survtype
Package Short Url https://bioconductor.org/packages/survtype/
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