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Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences

Bioconductor version: Release (3.19)

Visualising oligonucleotide patterns and sequence motifs occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.

Author: Vanja Haberle <vanja.haberle at>

Maintainer: Vanja Haberle <vanja.haberle at>

Citation (from within R, enter citation("seqPattern")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

seqPattern PDF R Script
Reference Manual PDF


biocViews SequenceMatching, Software, Visualization
Version 1.36.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-3
Depends methods, R (>= 2.15.0)
Imports Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix
System Requirements
See More
Suggests BSgenome.Drerio.UCSC.danRer7, CAGEr, RUnit, BiocGenerics, BiocStyle
Linking To
Enhances parallel
Depends On Me
Imports Me genomation, seqArchRplus
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package seqPattern_1.36.0.tar.gz
Windows Binary
macOS Binary (x86_64) seqPattern_1.36.0.tgz
macOS Binary (arm64) seqPattern_1.36.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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