To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("psygenet2r")

In most cases, you don't need to download the package archive at all.

psygenet2r

DOI: 10.18129/B9.bioc.psygenet2r    

psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders

Bioconductor version: Release (3.5)

Package to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.

Author: Alba Gutierrez-Sacristan [aut, cre], Carles Hernandez-Ferrer [aut], Jaun R. Gonzalez [aut], Laura I. Furlong [aut]

Maintainer: Alba Gutierrez-Sacristan <alba.gutierrez at upf.edu>

Citation (from within R, enter citation("psygenet2r")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("psygenet2r")

Documentation

HTML R Script psygenet2r: An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
HTML R Script psygenet2r: Case study on GWAS on bipolar disorder
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews BiomedicalInformatics, DataImport, DataRepresentation, Genetics, Infrastructure, Software
Version 1.9.1
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License MIT + file LICENSE
Depends R (>= 3.4)
Imports stringr, RCurl, igraph, ggplot2, reshape2, grid, parallel, biomaRt, BgeeDB, topGO, BiocInstaller, Biobase, labeling
LinkingTo
Suggests testthat, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source psygenet2r_1.9.1.tar.gz
Windows Binary psygenet2r_1.9.1.zip
Mac OS X 10.11 (El Capitan) psygenet2r_1.9.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/psygenet2r
Package Short Url http://bioconductor.org/packages/psygenet2r/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: