powerTCR

Model-Based Comparative Analysis of the TCR Repertoire


Bioconductor version: Release (3.19)

This package provides a model for the clone size distribution of the TCR repertoire. Further, it permits comparative analysis of TCR repertoire libraries based on theoretical model fits.

Author: Hillary Koch

Maintainer: Hillary Koch <hillary.koch01 at gmail.com>

Citation (from within R, enter citation("powerTCR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("powerTCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("powerTCR")
Vignette Title HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews BiomedicalInformatics, Clustering, Software
Version 1.24.0
In Bioconductor since BioC 3.7 (R-3.5) (6.5 years)
License Artistic-2.0
Depends
Imports cubature, doParallel, evmix, foreach, magrittr, methods, parallel, purrr, stats, truncdist, vegan, VGAM
System Requirements
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Suggests BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package powerTCR_1.24.0.tar.gz
Windows Binary (x86_64) powerTCR_1.24.0.zip
macOS Binary (x86_64) powerTCR_1.24.0.tgz
macOS Binary (arm64) powerTCR_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/powerTCR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/powerTCR
Bioc Package Browser https://code.bioconductor.org/browse/powerTCR/
Package Short Url https://bioconductor.org/packages/powerTCR/
Package Downloads Report Download Stats