powerTCR

This is the development version of powerTCR; for the stable release version, see powerTCR.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Model-Based Comparative Analysis of the TCR Repertoire

Bioconductor version: Development (3.24)

This package provides a model for the clone size distribution of the TCR repertoire. Further, it permits comparative analysis of TCR repertoire libraries based on theoretical model fits.

Author: Hillary Koch

Maintainer: Hillary Koch <hillary.koch01 at gmail.com>

Citation (from within R, enter citation("powerTCR")):

Hillary Koch. powerTCR: Model-Based Comparative Analysis of the TCR Repertoire. doi:10.18129/B9.bioc.powerTCR, R package version 1.33.0, https://bioconductor.org/packages/powerTCR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("powerTCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("powerTCR")

Vignette Title	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BiomedicalInformatics, Clustering, Software
Version	1.33.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	Artistic-2.0
Depends
Imports	cubature, doParallel, evmix, foreach, magrittr, methods, parallel, purrr, stats, truncdist, vegan, VGAM
System Requirements
URL

Suggests	BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	powerTCR_1.33.0.tar.gz
Windows Binary (x86_64)	powerTCR_1.33.0.zip
macOS Binary (big-sur-x86_64)	powerTCR_1.33.0.tgz
macOS Binary (sonoma-arm64)	powerTCR_1.33.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/powerTCR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/powerTCR
Package Short Url	https://bioconductor.org/packages/powerTCR/
Package Downloads Report	Download Stats