To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pathVar")

In most cases, you don't need to download the package archive at all.

pathVar

 

   

Methods to Find Pathways with Significantly Different Variability

Bioconductor version: Release (3.5)

This package contains the functions to find the pathways that have significantly different variability than a reference gene set. It also finds the categories from this pathway that are significant where each category is a cluster of genes. The genes are separated into clusters by their level of variability.

Author: Laurence de Torrente, Samuel Zimmerman, Jessica Mar

Maintainer: Samuel Zimmerman <sezimmer at einstein.yu.edu>

Citation (from within R, enter citation("pathVar")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pathVar")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathVar")

 

PDF R Script Tutorial on How to Use the Functions in the \texttt{PathVar} Package
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneSetEnrichment, GeneticVariability, Pathways, Software
Version 1.6.0
In Bioconductor since BioC 3.2 (R-3.2) (1.5 years)
License LGPL (>= 2.0)
Depends R (>= 3.3.0), methods, ggplot2, gridExtra
Imports EMT, mclust, Matching, data.table, stats, grDevices, graphics, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source pathVar_1.6.0.tar.gz
Windows Binary pathVar_1.6.0.zip
Mac OS X 10.11 (El Capitan) pathVar_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/pathVar/tree/release-3.5
Package Short Url http://bioconductor.org/packages/pathVar/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: