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PANDA Algorithm

Bioconductor version: Release (3.19)

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.

Author: Dan Schlauch, Joseph N. Paulson, Albert Young, John Quackenbush, Kimberly Glass

Maintainer: Joseph N. Paulson <paulson.joseph at>, Dan Schlauch <dschlauch at>

Citation (from within R, enter citation("pandaR")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

pandaR Package HTML R Script
Reference Manual PDF


biocViews GeneExpression, GeneRegulation, GraphAndNetwork, Microarray, Network, NetworkInference, Software, StatisticalMethod, Transcription
Version 1.36.0
In Bioconductor since BioC 3.1 (R-3.2) (9.5 years)
License GPL-2
Depends R (>= 3.0.0), methods, Biobase, BiocGenerics
Imports matrixStats, igraph, ggplot2, grid, reshape, plyr, RUnit, hexbin
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Suggests knitr, rmarkdown
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Depends On Me netZooR
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Follow Installation instructions to use this package in your R session.

Source Package pandaR_1.36.0.tar.gz
Windows Binary
macOS Binary (x86_64) pandaR_1.36.0.tgz
macOS Binary (arm64) pandaR_1.36.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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