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pandaR

PANDA Algorithm


Bioconductor version: Release (3.18)

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.

Author: Dan Schlauch, Joseph N. Paulson, Albert Young, John Quackenbush, Kimberly Glass

Maintainer: Joseph N. Paulson <paulson.joseph at gene.com>, Dan Schlauch <dschlauch at genospace.com>

Citation (from within R, enter citation("pandaR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pandaR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pandaR")
pandaR Package HTML R Script
Reference Manual PDF

Details

biocViews GeneExpression, GeneRegulation, GraphAndNetwork, Microarray, Network, NetworkInference, Software, StatisticalMethod, Transcription
Version 1.34.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-2
Depends R (>= 3.0.0), methods, Biobase, BiocGenerics
Imports matrixStats, igraph, ggplot2, grid, reshape, plyr, RUnit, hexbin
System Requirements
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Suggests knitr, rmarkdown
Linking To
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Depends On Me netZooR
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pandaR_1.34.0.tar.gz
Windows Binary pandaR_1.34.0.zip (64-bit only)
macOS Binary (x86_64) pandaR_1.34.0.tgz
macOS Binary (arm64) pandaR_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pandaR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pandaR
Bioc Package Browser https://code.bioconductor.org/browse/pandaR/
Package Short Url https://bioconductor.org/packages/pandaR/
Package Downloads Report Download Stats