pageRank

DOI: 10.18129/B9.bioc.pageRank    

Temporal and Multiplex PageRank for Gene Regulatory Network Analysis

Bioconductor version: Release (3.12)

Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.

Author: Hongxu Ding [aut, cre, ctb, cph]

Maintainer: Hongxu Ding <hd2326 at columbia.edu>

Citation (from within R, enter citation("pageRank")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pageRank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pageRank")

 

PDF R Script introduction.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneTarget, Network, Software, StatisticalMethod
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-2
Depends R (>= 4.0)
Imports GenomicRanges, igraph, motifmatchr, stats, utils, grDevices, graphics
LinkingTo
Suggests bcellViper, BSgenome.Hsapiens.UCSC.hg19, JASPAR2018, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, TFBSTools, GenomicFeatures, annotate
SystemRequirements
Enhances
URL https://github.com/hd2326/pageRank
BugReports https://github.com/hd2326/pageRank/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pageRank_1.0.0.tar.gz
Windows Binary pageRank_1.0.0.zip
macOS 10.13 (High Sierra) pageRank_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pageRank
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pageRank
Package Short Url https://bioconductor.org/packages/pageRank/
Package Downloads Report Download Stats

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