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Temporal and Multiplex PageRank for Gene Regulatory Network Analysis

Bioconductor version: Release (3.18)

Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.

Author: Hongxu Ding [aut, cre, ctb, cph]

Maintainer: Hongxu Ding <hd2326 at columbia.edu>

Citation (from within R, enter citation("pageRank")):


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biocViews GeneTarget, Network, Software, StatisticalMethod
Version 1.12.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-2
Depends R (>= 4.0)
Imports GenomicRanges, igraph, motifmatchr, stats, utils, grDevices, graphics
System Requirements
URL https://github.com/hd2326/pageRank
Bug Reports https://github.com/hd2326/pageRank/issues
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Suggests bcellViper, BSgenome.Hsapiens.UCSC.hg19, JASPAR2018, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, TFBSTools, GenomicFeatures, annotate
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Follow Installation instructions to use this package in your R session.

Source Package pageRank_1.12.0.tar.gz
Windows Binary pageRank_1.12.0.zip
macOS Binary (x86_64) pageRank_1.12.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/pageRank
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pageRank
Bioc Package Browser https://code.bioconductor.org/browse/pageRank/
Package Short Url https://bioconductor.org/packages/pageRank/
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