Registration Open for Bioc2024

oppti

Outlier Protein and Phosphosite Target Identifier


Bioconductor version: Release (3.19)

The aim of oppti is to analyze protein (and phosphosite) expressions to find outlying markers for each sample in the given cohort(s) for the discovery of personalized actionable targets.

Author: Abdulkadir Elmas

Maintainer: Abdulkadir Elmas <abdulkadir.elmas at mssm.edu>

Citation (from within R, enter citation("oppti")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("oppti")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("oppti")
Outlier Protein and Phosphosite Target Identifier HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiomedicalInformatics, DifferentialExpression, GeneExpression, GeneTarget, Network, Proteomics, Regression, Software
Version 1.18.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License MIT
Depends R (>= 3.5)
Imports limma, stats, reshape, ggplot2, grDevices, RColorBrewer, pheatmap, knitr, methods, devtools, parallelDist
System Requirements
URL https://github.com/Huang-lab/oppti
Bug Reports https://github.com/Huang-lab/oppti/issues
See More
Suggests markdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package oppti_1.18.0.tar.gz
Windows Binary oppti_1.18.0.zip
macOS Binary (x86_64) oppti_1.18.0.tgz
macOS Binary (arm64) oppti_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/oppti
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/oppti
Bioc Package Browser https://code.bioconductor.org/browse/oppti/
Package Short Url https://bioconductor.org/packages/oppti/
Package Downloads Report Download Stats