DOI: 10.18129/B9.bioc.oppti  

This is the development version of oppti; for the stable release version, see oppti.

Outlier Protein and Phosphosite Target Identifier

Bioconductor version: Development (3.19)

The aim of oppti is to analyze protein (and phosphosite) expressions to find outlying markers for each sample in the given cohort(s) for the discovery of personalized actionable targets.

Author: Abdulkadir Elmas

Maintainer: Abdulkadir Elmas <abdulkadir.elmas at mssm.edu>

Citation (from within R, enter citation("oppti")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Outlier Protein and Phosphosite Target Identifier
PDF   Reference Manual
Text   NEWS


biocViews BiomedicalInformatics, DifferentialExpression, GeneExpression, GeneTarget, Network, Proteomics, Regression, Software
Version 1.17.0
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License MIT
Depends R (>= 3.5)
Imports limma, stats, reshape, ggplot2, grDevices, RColorBrewer, pheatmap, knitr, methods, devtools, parallelDist
Suggests markdown
URL https://github.com/Huang-lab/oppti
BugReports https://github.com/Huang-lab/oppti/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package oppti_1.17.0.tar.gz
Windows Binary oppti_1.17.0.zip
macOS Binary (x86_64) oppti_1.17.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/oppti
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/oppti
Bioc Package Browser https://code.bioconductor.org/browse/oppti/
Package Short Url https://bioconductor.org/packages/oppti/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: