To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("openPrimeRui")

In most cases, you don't need to download the package archive at all.

openPrimeRui

DOI: 10.18129/B9.bioc.openPrimeRui    

Shiny Application for Multiplex PCR Primer Design and Analysis

Bioconductor version: Release (3.6)

A Shiny application providing methods for designing, evaluating, and comparing primer sets for multiplex polymerase chain reaction. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected.

Author: Matthias Döring [aut, cre], Nico Pfeifer [aut]

Maintainer: Matthias Döring <mdoering at mpi-inf.mpg.de>

Citation (from within R, enter citation("openPrimeRui")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("openPrimeRui")

Documentation

HTML R Script openPrimeRui
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, Technology
Version 1.0.0
License GPL-2
Depends R (>= 3.4.0), openPrimeR(>= 0.99.0)
Imports shiny (>= 1.0.2), shinyjs (>= 0.9), shinyBS (>= 0.61), DT (>= 0.2), rmarkdown (>= 1.0)
LinkingTo
Suggests knitr (>= 1.13)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package openPrimeRui_1.0.0.tar.gz
Windows Binary openPrimeRui_1.0.0.zip
Mac OS X 10.11 (El Capitan) openPrimeRui_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/openPrimeRui
Package Short Url http://bioconductor.org/packages/openPrimeRui/
Package Downloads Report Download Stats

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