nuCpos
An R package for prediction of nucleosome positions
Bioconductor version: Release (3.19)
nuCpos, a derivative of NuPoP, is an R package for prediction of nucleosome positions. nuCpos calculates local and whole nucleosomal histone binding affinity (HBA) scores for a given 147-bp sequence. Note: This package was designed to demonstrate the use of chemical maps in prediction. As the parental package NuPoP now provides chemical-map-based prediction, the function for dHMM-based prediction was removed from this package. nuCpos continues to provide functions for HBA calculation.
Author: Hiroaki Kato, Takeshi Urano
Maintainer: Hiroaki Kato <hkato at med.shimane-u.ac.jp>
citation("nuCpos")
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Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nuCpos")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nuCpos")
An R package for prediction of nucleosome positioning | R Script | |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Epigenetics, Genetics, NucleosomePositioning, Software |
Version | 1.22.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (6 years) |
License | GPL-2 |
Depends | R (>= 4.2.0) |
Imports | graphics, methods |
System Requirements | |
URL |
See More
Suggests | NuPoP, Biostrings, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | nuCpos_1.22.0.tar.gz |
Windows Binary | nuCpos_1.22.0.zip |
macOS Binary (x86_64) | nuCpos_1.22.0.tgz |
macOS Binary (arm64) | nuCpos_1.22.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/nuCpos |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/nuCpos |
Bioc Package Browser | https://code.bioconductor.org/browse/nuCpos/ |
Package Short Url | https://bioconductor.org/packages/nuCpos/ |
Package Downloads Report | Download Stats |