nondetects

Non-detects in qPCR data


Bioconductor version: Release (3.19)

Methods to model and impute non-detects in the results of qPCR experiments.

Author: Matthew N. McCall <mccallm at gmail.com>, Valeriia Sherina <valery.sherina at gmail.com>

Maintainer: Valeriia Sherina <valery.sherina at gmail.com>

Citation (from within R, enter citation("nondetects")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nondetects")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AssayDomain, GeneExpression, Preprocessing, Software, Technology, WorkflowStep, qPCR
Version 2.34.0
In Bioconductor since BioC 2.14 (R-3.1) (10.5 years)
License GPL-3
Depends R (>= 3.2), Biobase(>= 2.22.0)
Imports limma, mvtnorm, utils, methods, arm, HTqPCR(>= 1.16.0)
System Requirements
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Suggests knitr, rmarkdown, BiocStyle(>= 1.0.0), RUnit, BiocGenerics(>= 0.8.0)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/nondetects
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nondetects
Package Short Url https://bioconductor.org/packages/nondetects/
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