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nondetects

This is the development version of nondetects; for the stable release version, see nondetects.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14

Non-detects in qPCR data


Bioconductor version: Development (3.24)

Methods to model and impute non-detects in the results of qPCR experiments.

Author: Matthew N. McCall <mccallm at gmail.com>, Valeriia Sherina <valery.sherina at gmail.com>

Maintainer: Valeriia Sherina <valery.sherina at gmail.com>

Citation (from within R, enter citation("nondetects")):

Matthew N. McCall, Valeriia Sherina. nondetects: Non-detects in qPCR data. doi:10.18129/B9.bioc.nondetects, R package version 2.43.0, https://bioconductor.org/packages/nondetects.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("nondetects")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nondetects")
Title of your vignette HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews AssayDomain, GeneExpression, Preprocessing, Software, Technology, WorkflowStep, qPCR
Version2.43.0
In Bioconductor sinceBioC 2.14 (R-3.1) (12.5 years)
License GPL-3
Depends R (>= 3.2), Biobase (>= 2.22.0)
Imports limma, mvtnorm, utils, methods, arm, HTqPCR (>= 1.16.0)
System Requirements
URL
See More
Suggests knitr, rmarkdown, BiocStyle (>= 1.0.0), RUnit, BiocGenerics (>= 0.8.0)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nondetects_2.43.0.tar.gz
Windows Binary (x86_64) nondetects_2.43.0.zip
macOS Binary (big-sur-x86_64) nondetects_2.43.0.tgz
macOS Binary (sonoma-arm64) nondetects_2.43.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/nondetects
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/nondetects
Package Short Url https://bioconductor.org/packages/nondetects/
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