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Load FastqQC reports and other NGS related files

Bioconductor version: Release (3.19)

This package provides methods and object classes for parsing FastQC reports and output summaries from other NGS tools into R. As well as parsing files, multiple plotting methods have been implemented for visualising the parsed data. Plots can be generated as static ggplot objects or interactive plotly objects.

Author: Stevie Pederson [aut, cre] , Christopher Ward [aut], Thu-Hien To [aut]

Maintainer: Stevie Pederson < at>

Citation (from within R, enter citation("ngsReports")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

An Introduction To ngsReports HTML R Script
Reference Manual PDF


biocViews QualityControl, ReportWriting, Software
Version 2.6.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License LGPL-3
Depends R (>= 4.2.0), BiocGenerics, ggplot2 (>= 3.5.0), patchwork (>= 1.1.1), tibble (>= 1.3.1)
Imports Biostrings, checkmate, dplyr (>= 1.1.0), forcats, ggdendro, grDevices (>= 3.6.0), grid, jsonlite, lifecycle, lubridate, methods, plotly (>= 4.9.4), reshape2, rlang, rmarkdown, scales, stats, stringr, tidyr, tidyselect (>= 0.2.3), utils, zoo
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Follow Installation instructions to use this package in your R session.

Source Package ngsReports_2.6.0.tar.gz
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macOS Binary (x86_64) ngsReports_2.6.0.tgz
macOS Binary (arm64) ngsReports_2.6.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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