To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("netprioR")

In most cases, you don't need to download the package archive at all.

netprioR

 

   

A model for network-based prioritisation of genes

Bioconductor version: Release (3.4)

A model for semi-supervised prioritisation of genes integrating network data, phenotypes and additional prior knowledge about TP and TN gene labels from the literature or experts.

Author: Fabian Schmich

Maintainer: Fabian Schmich <fabian.schmich at bsse.ethz.ch>

Citation (from within R, enter citation("netprioR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("netprioR")

Documentation

HTML R Script netprioR Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, Network, Preprocessing, Software
Version 1.0.0
In Bioconductor since BioC 3.4 (R-3.3) (< 6 months)
License GPL-3
Depends methods, graphics, R (>= 3.3)
Imports stats, Matrix, dplyr, doParallel, foreach, parallel, sparseMVN, ggplot2, gridExtra, pROC
LinkingTo
Suggests knitr, BiocStyle, pander
SystemRequirements
Enhances
URL http://bioconductor.org/packages/netprioR
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source netprioR_1.0.0.tar.gz
Windows Binary netprioR_1.0.0.zip
Mac OS X 10.9 (Mavericks) netprioR_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/netprioR/tree/release-3.4
Package Short Url http://bioconductor.org/packages/netprioR/
Package Downloads Report Download Stats

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