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netprioR

A model for network-based prioritisation of genes

Bioconductor version: 3.23 · Package version: 1.37.0

A model for semi-supervised prioritisation of genes integrating network data, phenotypes and additional prior knowledge about TP and TN gene labels from the literature or experts.

DOI: 10.18129/B9.bioc.netprioR

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netprioR")

Details

MaintainerFabian Schmich <fabian.schmich@bsse.ethz.ch>
AuthorFabian Schmich
LicenseGPL-3
URLhttp://bioconductor.org/packages/netprioR
StatusDeprecated
Source branchRELEASE_3_23
Build report Bioconductor build system, r-universe
biocViewsCellBasedAssays, ImmunoOncology, Network, Preprocessing, Software
Package Short Url https://bioconductor.org/packages/netprioR/

Citation

From within R, enter citation("netprioR"):

Fabian Schmich. netprioR: A model for network-based prioritisation of genes. doi:10.18129/B9.bioc.netprioR, R package version 1.37.0, https://bioconductor.org/packages/netprioR.

Generated from the package metadata; it may differ from the package's own citation.

Download

Follow the installation instructions to use this package in your R session.

Source packagenetprioR_1.37.0.tar.gz
Windows binary (x86_64)netprioR_1.37.0.zip
macOS binary (arm64)netprioR_1.37.0.tgz
macOS binary (x86_64)netprioR_1.37.0.tgz
Dependencies

Depends: methods, graphics, R (>= 3.3)

Imports: stats, Matrix, dplyr, doParallel, foreach, parallel, sparseMVN, ggplot2, gridExtra, pROC

Suggests: knitr, BiocStyle, pander