DOI: 10.18129/B9.bioc.ndexr    

NDEx R client library

Bioconductor version: Release (3.7)

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Frank Kramer <frank.kramer at med.uni-goettingen.de>, Florian Auer <florian.auer at med.uni-goettingen.de>, Alex Ishkin <aleksandr.ishkin at thomsonreuters.com>, Dexter Pratt <depratt at ucsc.edu>

Maintainer: Florian Auer <florian.auer at med.uni-goettingen.de>

Citation (from within R, enter citation("ndexr")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


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biocViews DataImport, Network, Pathways, Software
Version 1.2.0
License BSD
Depends igraph
Imports httr, jsonlite, plyr, tidyr
Suggests BiocStyle, testthat, knitr, rmarkdown
URL https://github.com/frankkramer-lab/ndexr
BugReports https://github.com/frankkramer-lab/ndexr/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ndexr_1.2.0.tar.gz
Windows Binary ndexr_1.2.0.zip
Mac OS X 10.11 (El Capitan) ndexr_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ndexr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ndexr
Package Short Url http://bioconductor.org/packages/ndexr/
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