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ndexr

NDEx R client library


Bioconductor version: Release (3.18)

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Florian Auer [cre, aut] , Frank Kramer [ctb], Alex Ishkin [ctb], Dexter Pratt [ctb]

Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("ndexr")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ndexr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ndexr")
NDExR Vignette HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, Network, Pathways, Software
Version 1.24.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License BSD_3_clause + file LICENSE
Depends RCX
Imports httr, jsonlite, plyr, tidyr
System Requirements
URL https://github.com/frankkramer-lab/ndexr
Bug Reports https://github.com/frankkramer-lab/ndexr/issues
See More
Suggests BiocStyle, testthat, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ndexr_1.24.0.tar.gz
Windows Binary ndexr_1.24.0.zip
macOS Binary (x86_64) ndexr_1.24.0.tgz
macOS Binary (arm64) ndexr_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ndexr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ndexr
Bioc Package Browser https://code.bioconductor.org/browse/ndexr/
Package Short Url https://bioconductor.org/packages/ndexr/
Package Downloads Report Download Stats