ndexr
This is the development version of ndexr; for the stable release version, see ndexr.
All Bioconductor versions of ndexr
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6
NDEx R client library
Bioconductor version: 3.24 · Package version: 1.35.0
This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.
Author: Florian Auer [cre, aut] 
, Frank Kramer [ctb], Alex Ishkin [ctb], Dexter Pratt [ctb]
Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>
Citation
From within R, enter citation("ndexr"):
Florian Auer. ndexr: NDEx R client library. doi:10.18129/B9.bioc.ndexr, R package version 1.35.0, https://bioconductor.org/packages/ndexr.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("ndexr")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.35.0 |
| License | BSD_3_clause + file LICENSE |
| URL | https://github.com/frankkramer-lab/ndexr |
| Bug Reports | https://github.com/frankkramer-lab/ndexr/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.6 (R-3.4) (8 years) |
| Downloads rank | 1834 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Network, Pathways, Software |
| Package Short Url | https://bioconductor.org/packages/ndexr/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ndexr")| NDExR - R implementaion for NDEx server API | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | ndexr_1.35.0.tar.gz |
| macOS binary (arm64) | ndexr_1.35.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ndexr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ndexr |
| Package Downloads Report | Download Stats |