ndexr

DOI: 10.18129/B9.bioc.ndexr    

This is the development version of ndexr; to use it, please install the devel version of Bioconductor.

NDEx R client library

Bioconductor version: Development (3.10)

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Florian Auer <florian.auer at informatik.uni-augsburg.de>, Frank Kramer <frank.kramer at informatik.uni-augsburg.de>, Alex Ishkin <aleksandr.ishkin at thomsonreuters.com>, Dexter Pratt <depratt at ucsc.edu>

Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("ndexr")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ndexr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ndexr")

 

HTML R Script NDExR Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Network, Pathways, Software
Version 1.7.0
In Bioconductor since BioC 3.6 (R-3.4) (2 years)
License BSD
Depends igraph
Imports httr, jsonlite, plyr, tidyr
LinkingTo
Suggests BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/frankkramer-lab/ndexr
BugReports https://github.com/frankkramer-lab/ndexr/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ndexr_1.7.0.tar.gz
Windows Binary ndexr_1.7.0.zip
Mac OS X 10.11 (El Capitan) ndexr_1.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ndexr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ndexr
Package Short Url http://bioconductor.org/packages/ndexr/
Package Downloads Report Download Stats

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