myvariant
Accesses MyVariant.info variant query and annotation services
Bioconductor version: 3.23 · Package version: 1.42.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
MyVariant.info is a comprehensive aggregation of variant annotation resources. myvariant is a wrapper for querying MyVariant.info services
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("myvariant")Details
| Maintainer | Adam Mark, Chunlei Wu <cwu@scripps.edu> |
| Author | Adam Mark |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, GenomicVariation, Software, VariantAnnotation |
| Package Short Url | https://bioconductor.org/packages/myvariant/ |
Citation
From within R, enter citation("myvariant"):
Adam Mark. myvariant: Accesses MyVariant.info variant query and annotation services. doi:10.18129/B9.bioc.myvariant, R package version 1.42.0, https://bioconductor.org/packages/myvariant.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | myvariant_1.42.0.tar.gz |
| Windows binary (x86_64) | myvariant_1.42.0.zip |
| macOS binary (arm64) | myvariant_1.42.0.tgz |
| macOS binary (x86_64) | myvariant_1.42.0.tgz |
Dependencies
Depends: R (>= 3.2.1), VariantAnnotation
Imports: httr, jsonlite, S4Vectors, Hmisc, plyr, magrittr, Seqinfo, GenomeInfoDb
Suggests: BiocStyle