muscle
Multiple Sequence Alignment with MUSCLE
Bioconductor version: Release (3.20)
MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.
Author: Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.
Maintainer: Alex T. Kalinka <alex.t.kalinka at gmail.com>
Citation (from within R, enter
citation("muscle")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("muscle")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("muscle")
A guide to using muscle | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Alignment, DataImport, Genetics, MultipleSequenceAlignment, SequenceMatching, Sequencing, Software |
Version | 3.48.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
License | Unlimited |
Depends | Biostrings |
Imports | |
System Requirements | |
URL | http://www.drive5.com/muscle/ |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | orthGS, seqmagick |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | muscle_3.48.0.tar.gz |
Windows Binary (x86_64) | muscle_3.48.0.zip |
macOS Binary (x86_64) | muscle_3.48.0.tgz |
macOS Binary (arm64) | muscle_3.47.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/muscle |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/muscle |
Bioc Package Browser | https://code.bioconductor.org/browse/muscle/ |
Package Short Url | https://bioconductor.org/packages/muscle/ |
Package Downloads Report | Download Stats |