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Combining GSEA-based pathway enrichment with multi omics data integration

Bioconductor version: Release (3.19)

Extracted features from pathways derived from 8 different databases (KEGG, Reactome, Biocarta, etc.) can be used on transcriptomic, proteomic, and/or metabolomic level to calculate a combined GSEA-based enrichment score.

Author: Sebastian Canzler [aut, cre] , Jörg Hackermüller [aut]

Maintainer: Sebastian Canzler <sebastian.canzler at>

Citation (from within R, enter citation("multiGSEA")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

multiGSEA.html HTML R Script
Reference Manual PDF


biocViews BioCarta, GeneSetEnrichment, Pathways, Reactome, Software
Version 1.14.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3
Depends R (>= 4.0.0)
Imports magrittr, graphite, AnnotationDbi, metaboliteIDmapping, dplyr, fgsea, metap, rappdirs, rlang, methods
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Follow Installation instructions to use this package in your R session.

Source Package multiGSEA_1.14.0.tar.gz
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