multiGSEA
This is the development version of multiGSEA; for the stable release version, see multiGSEA.
All Bioconductor versions of multiGSEA
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12
Combining GSEA-based pathway enrichment with multi omics data integration
Bioconductor version: 3.24 · Package version: 1.23.0
Extracted features from pathways derived from 8 different databases (KEGG, Reactome, Biocarta, etc.) can be used on transcriptomic, proteomic, and/or metabolomic level to calculate a combined GSEA-based enrichment score.
Author: Sebastian Canzler [aut, cre] 
, Jörg Hackermüller [aut]
Maintainer: Sebastian Canzler <sebastian.canzler at ufz.de>
Citation
From within R, enter citation("multiGSEA"):
Sebastian Canzler, Jörg Hackermüller. multiGSEA: Combining GSEA-based pathway enrichment with multi omics data integration. doi:10.18129/B9.bioc.multiGSEA, R package version 1.23.0, https://bioconductor.org/packages/multiGSEA.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("multiGSEA")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.23.0 |
| License | GPL-3 |
| URL | https://github.com/yigbt/multiGSEA |
| Bug Reports | https://github.com/yigbt/multiGSEA/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.12 (R-4.0) (5 years) |
| Downloads rank | 1218 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | BioCarta, GeneSetEnrichment, Pathways, Reactome, Software |
| Package Short Url | https://bioconductor.org/packages/multiGSEA/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("multiGSEA")| multiGSEA: an example workflow | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | multiGSEA_1.23.0.tar.gz |
| Windows binary (x86_64) | multiGSEA_1.23.0.zip |
| macOS binary (arm64) | multiGSEA_1.23.0.tgz |
| macOS binary (x86_64) | multiGSEA_1.23.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/multiGSEA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/multiGSEA |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.0.0)
Imports: magrittr, graphite, AnnotationDbi, metaboliteIDmapping, dplyr, fgsea, metap, rappdirs, rlang, methods
Suggests: org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Ss.eg.db, org.Bt.eg.db, org.Ce.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.Gg.eg.db, org.Xl.eg.db, org.Cf.eg.db, knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0)