methInheritSim
Simulating Whole-Genome Inherited Bisulphite Sequencing Data
Bioconductor version: 3.23 · Package version: 1.34.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("methInheritSim")Details
| Maintainer | Pascal Belleau <pascal_belleau@hotmail.com> |
| Author | Pascal Belleau, Astrid Deschênes and Arnaud Droit |
| License | Artistic-2.0 |
| URL | https://github.com/belleau/methInheritSim |
| Bug Reports | https://github.com/belleau/methInheritSim/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome |
| Package Short Url | https://bioconductor.org/packages/methInheritSim/ |
Citation
From within R, enter citation("methInheritSim"):
Pascal Belleau, Astrid Deschênes and Arnaud Droit. methInheritSim: Simulating Whole-Genome Inherited Bisulphite Sequencing Data. doi:10.18129/B9.bioc.methInheritSim, R package version 1.34.0, https://bioconductor.org/packages/methInheritSim.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | methInheritSim_1.34.0.tar.gz |
| Windows binary (x86_64) | methInheritSim_1.34.0.zip |
| macOS binary (arm64) | methInheritSim_1.34.0.tgz |
| macOS binary (x86_64) | methInheritSim_1.34.0.tgz |
Dependencies
Depends: R (>= 3.5.0)
Imports: methylKit, GenomicRanges, Seqinfo, parallel, BiocGenerics, S4Vectors, methods, stats, IRanges, msm
Suggests: BiocStyle, knitr, rmarkdown, RUnit, methylInheritance
Reverse dependencies
Suggests Me (1): methylInheritance