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made4

This is the released version of made4; for the devel version, see made4.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Multivariate analysis of microarray data using ADE4


Bioconductor version: Release (3.23)

Multivariate data analysis and graphical display of microarray data. Functions include for supervised dimension reduction (between group analysis) and joint dimension reduction of 2 datasets (coinertia analysis). It contains functions that require R package ade4.

Author: Aedin Culhane

Maintainer: Aedin Culhane <Aedin at jimmy.harvard.edu>

Citation (from within R, enter citation("made4")):

Aedin Culhane. made4: Multivariate analysis of microarray data using ADE4. doi:10.18129/B9.bioc.made4, R package version 1.86.0, https://bioconductor.org/packages/made4.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("made4")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("made4")
Authoring R Markdown vignettes HTML R Script
Reference ManualPDF

Details

biocViews Classification, Clustering, DimensionReduction, GeneExpression, Microarray, MultipleComparison, PrincipalComponent, Sequencing, Software, Transcriptomics
Version1.86.0
In Bioconductor sinceBioC 1.6 (R-2.1) or earlier (> 21.5 years)
License Artistic-2.0
Depends RColorBrewer, gplots, scatterplot3d, Biobase, SummarizedExperiment
Imports ade4
System Requirements
URLhttp://www.hsph.harvard.edu/aedin-culhane/
See More
Suggests affy, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me omicade4
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package made4_1.86.0.tar.gz
Windows Binary (x86_64) made4_1.86.0.zip
macOS Binary (big-sur-x86_64) made4_1.86.0.tgz
macOS Binary (sonoma-arm64) made4_1.86.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/made4
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/made4
Package Short Url https://bioconductor.org/packages/made4/
Package Downloads ReportDownload Stats