mBPCR
Bayesian Piecewise Constant Regression for DNA copy number estimation
Bioconductor version: Release (3.19)
It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.
Author: P.M.V. Rancoita <rancoita.paola at gmail.com>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>
Maintainer: P.M.V. Rancoita <rancoita.paola at gmail.com>
Citation (from within R, enter
citation("mBPCR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mBPCR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mBPCR")
mBPCR | R Script | |
Reference Manual |
Details
biocViews | CopyNumberVariation, Microarray, SNP, Software, aCGH |
Version | 1.58.0 |
In Bioconductor since | BioC 2.5 (R-2.10) (15 years) |
License | GPL (>= 2) |
Depends | oligoClasses, GWASTools |
Imports | Biobase, graphics, methods, utils, grDevices |
System Requirements | |
URL | http://www.idsia.ch/~paola/mBPCR |
See More
Suggests | xtable |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | mBPCR_1.58.0.tar.gz |
Windows Binary | mBPCR_1.58.0.zip |
macOS Binary (x86_64) | mBPCR_1.58.0.tgz |
macOS Binary (arm64) | mBPCR_1.58.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/mBPCR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mBPCR |
Bioc Package Browser | https://code.bioconductor.org/browse/mBPCR/ |
Package Short Url | https://bioconductor.org/packages/mBPCR/ |
Package Downloads Report | Download Stats |