GWASTools
Tools for Genome Wide Association Studies
Bioconductor version: 3.23 · Package version: 1.58.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GWASTools")Details
| Maintainer | Stephanie M. Gogarten <sdmorris@uw.edu> |
| Author | Stephanie M. Gogarten [aut], Cathy Laurie [aut], Tushar Bhangale [aut], Matthew P. Conomos [aut], Cecelia Laurie [aut], Michael Lawrence [aut], Caitlin McHugh [aut], Ian Painter [aut], Xiuwen Zheng [aut], Jess Shen [aut], Rohit Swarnkar [aut], Adrienne Stilp [aut], Sarah Nelson [aut], David Levine [aut], Sonali Kumari [ctb] (Converted vignettes from Sweave to RMarkdown / HTML.), Stephanie M. Gogarten [cre] |
| License | Artistic-2.0 |
| URL | https://github.com/smgogarten/GWASTools |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneticVariability, Microarray, QualityControl, SNP, Software |
| Package Short Url | https://bioconductor.org/packages/GWASTools/ |
Citation
From within R, enter citation("GWASTools"):
Stephanie M. Gogarten, Cathy Laurie, Tushar Bhangale, Matthew P. Conomos, Cecelia Laurie, Michael Lawrence, Caitlin McHugh, Ian Painter, Xiuwen Zheng, Jess Shen, Rohit Swarnkar, Adrienne Stilp, Sarah Nelson, David Levine. GWASTools: Tools for Genome Wide Association Studies. doi:10.18129/B9.bioc.GWASTools, R package version 1.58.0, https://bioconductor.org/packages/GWASTools.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GWASTools_1.58.0.tar.gz |
| Windows binary (x86_64) | GWASTools_1.58.0.zip |
| macOS binary (arm64) | GWASTools_1.58.0.tgz |
| macOS binary (x86_64) | GWASTools_1.58.0.tgz |
Dependencies
Depends: Biobase
Imports: graphics, stats, utils, methods, gdsfmt, DBI, RSQLite, GWASExactHW, DNAcopy, survival, sandwich, lmtest, logistf, quantsmooth, data.table
Suggests: ncdf4, GWASdata, BiocGenerics, RUnit, Biostrings, GenomicRanges, IRanges, SNPRelate, snpStats, S4Vectors, VariantAnnotation, parallel, BiocStyle, knitr
Reverse dependencies
Depends On Me (3): GWASdata, mBPCR, snplinkage
Imports Me (2): GENESIS, gwasurvivr
Suggests Me (1): podkat