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GUI for limma Package With Two Color Microarrays

Bioconductor version: Release (3.19)

A Graphical User Interface for differential expression analysis of two-color microarray data using the limma package.

Author: James Wettenhall [aut], Gordon Smyth [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at>

Citation (from within R, enter citation("limmaGUI")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

about.html HTML
CustMenu.html HTML
Extracting limma objects from limmaGUI files PDF
import.html HTML
index.html HTML
InputFiles.html HTML
lgDevel.html HTML
limmaGUI Vignette PDF R Script
LinModIntro.pdf PDF
windowsFocus.html HTML
Reference Manual PDF


biocViews BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, Preprocessing, QualityControl, Regression, Software, TimeCourse, TwoChannel, mRNAMicroarray
Version 1.80.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License GPL (>=2)
Imports methods, grDevices, graphics, limma, R2HTML, tcltk, tkrplot, xtable, utils
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Follow Installation instructions to use this package in your R session.

Source Package limmaGUI_1.80.0.tar.gz
Windows Binary
macOS Binary (x86_64) limmaGUI_1.80.0.tgz
macOS Binary (arm64) limmaGUI_1.80.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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