DOI: 10.18129/B9.bioc.limmaGUI    

This is the development version of limmaGUI; for the stable release version, see limmaGUI.

GUI for limma Package With Two Color Microarrays

Bioconductor version: Development (3.9)

A Graphical User Interface for differential expression analysis of two-color microarray data using the limma package.

Author: James Wettenhall [aut], Gordon Smyth [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at>

Citation (from within R, enter citation("limmaGUI")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("limmaGUI", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML about.html
HTML CustMenu.html
PDF Extracting limma objects from limmaGUI files
HTML import.html
HTML index.html
HTML InputFiles.html
HTML lgDevel.html
PDF R Script limmaGUI Vignette
PDF LinModIntro.pdf
HTML windowsFocus.html
PDF   Reference Manual


biocViews BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, Preprocessing, QualityControl, Regression, Software, TimeCourse, TwoChannel, mRNAMicroarray
Version 1.59.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 14 years)
License GPL (>=2)
Imports methods, grDevices, graphics, limma, R2HTML, tcltk, tkrplot, xtable, utils
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package limmaGUI_1.59.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) limmaGUI_1.59.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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