Welcome to the new bioconductor.org!

interacCircos

The Generation of Interactive Circos Plot


Bioconductor version: Release (3.18)

Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.

Author: Zhe Cui [aut, cre]

Maintainer: Zhe Cui <mrcuizhe at gmail.com>

Citation (from within R, enter citation("interacCircos")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("interacCircos")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("interacCircos")
interacCircos HTML R Script
Reference Manual PDF

Details

biocViews Software, Visualization
Version 1.12.0
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License GPL-3
Depends R (>= 4.1)
Imports RColorBrewer, htmlwidgets, plyr, methods
System Requirements
URL
See More
Suggests knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package interacCircos_1.12.0.tar.gz
Windows Binary interacCircos_1.12.0.zip
macOS Binary (x86_64) interacCircos_1.12.0.tgz
macOS Binary (arm64) interacCircos_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/interacCircos
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/interacCircos
Bioc Package Browser https://code.bioconductor.org/browse/interacCircos/
Package Short Url https://bioconductor.org/packages/interacCircos/
Package Downloads Report Download Stats