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igvR: integrative genomics viewer

Bioconductor version: Release (3.19)

Access to igv.js, the Integrative Genomics Viewer running in a web browser.

Author: Paul Shannon

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at>

Citation (from within R, enter citation("igvR")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Explore CTCF ChIP-seq alignments, MACS2 narrowPeaks, Motif Matching and H3K4me3 methylation HTML R Script
GWAS Tracks HTML R Script
Introduction: a simple demo HTML R Script
Obtain and Display H3K27ac K562 track from the AnnotationHub HTML R Script
Obtain and Display H3K4Me3 K562 track from UCSC table browser HTML R Script
Paired-end Interaction Tracks HTML R Script
Use a Custom Genome HTML R Script
Use a Stock Genome HTML R Script
Reference Manual PDF


biocViews GenomeBrowsers, Software, ThirdPartyClient, Visualization
Version 1.24.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License MIT + file LICENSE
Depends R (>= 3.5.0), GenomicRanges, GenomicAlignments, BrowserViz(>= 2.17.1)
Imports methods, BiocGenerics, httpuv, utils, rtracklayer, VariantAnnotation, RColorBrewer, httr
System Requirements
See More
Suggests RUnit, BiocStyle, knitr, rmarkdown, MotifDb, seqLogo
Linking To
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package igvR_1.24.0.tar.gz
Windows Binary
macOS Binary (x86_64) igvR_1.24.0.tgz
macOS Binary (arm64) igvR_1.24.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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