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iSEEhex

This is the released version of iSEEhex; for the devel version, see iSEEhex.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16

iSEE extension for summarising data points in hexagonal bins


Bioconductor version: Release (3.23)

This package provides panels summarising data points in hexagonal bins for `iSEE`. It is part of `iSEEu`, the iSEE universe of panels that extend the `iSEE` package.

Author: Kevin Rue-Albrecht [aut, cre] ORCID iD ORCID: 0000-0003-3899-3872 , Charlotte Soneson [aut] ORCID iD ORCID: 0000-0003-3833-2169 , Federico Marini [aut] ORCID iD ORCID: 0000-0003-3252-7758 , Aaron Lun [aut] ORCID iD ORCID: 0000-0002-3564-4813

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Citation (from within R, enter citation("iSEEhex")):

Kevin Rue-Albrecht, Charlotte Soneson, Federico Marini, Aaron Lun. iSEEhex: iSEE extension for summarising data points in hexagonal bins. doi:10.18129/B9.bioc.iSEEhex, R package version 1.14.0, https://bioconductor.org/packages/iSEEhex.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iSEEhex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEhex")
The iSEEhex package HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews Infrastructure, Software
Version1.14.0
In Bioconductor sinceBioC 3.16 (R-4.2) (4 years)
License Artistic-2.0
Depends SummarizedExperiment, iSEE
Imports ggplot2, hexbin, methods, shiny
System Requirements
URLhttps://github.com/iSEE/iSEEhex
Bug Reportshttps://support.bioconductor.org/t/iSEEhex
See More
Suggests BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), scRNAseq, scater
Linking To
Enhances
Depends On Me iSEEu
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSEEhex_1.14.0.tar.gz
Windows Binary (x86_64) iSEEhex_1.14.0.zip
macOS Binary (big-sur-x86_64) iSEEhex_1.14.0.tgz
macOS Binary (sonoma-arm64) iSEEhex_1.14.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/iSEEhex
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/iSEEhex
Package Short Url https://bioconductor.org/packages/iSEEhex/
Package Downloads ReportDownload Stats