iCNV

DOI: 10.18129/B9.bioc.iCNV    

Integrated Copy Number Variation detection

Bioconductor version: Release (3.7)

Integrative copy number variation (CNV) detection from multiple platform and experimental design.

Author: Zilu Zhou, Nancy Zhang

Maintainer: Zilu Zhou <zhouzilu at pennmedicine.upenn.edu>

Citation (from within R, enter citation("iCNV")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iCNV")

Documentation

HTML R Script iCNV Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews CopyNumberVariation, ExomeSeq, HiddenMarkovModel, SNP, Software, WholeGenome
Version 1.0.0
License GPL-2
Depends R (>= 3.3.1), CODEX
Imports fields, ggplot2, truncnorm, tidyr, data.table, dplyr, grDevices, graphics, stats, utils, rlang
LinkingTo
Suggests knitr, rmarkdown, WES.1KG.WUGSC
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iCNV_1.0.0.tar.gz
Windows Binary iCNV_1.0.0.zip
Mac OS X 10.11 (El Capitan) iCNV_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iCNV
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCNV
Package Short Url http://bioconductor.org/packages/iCNV/
Package Downloads Report Download Stats

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