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iCNV

Integrated Copy Number Variation detection


Bioconductor version: Release (3.18)

Integrative copy number variation (CNV) detection from multiple platform and experimental design.

Author: Zilu Zhou, Nancy Zhang

Maintainer: Zilu Zhou <zhouzilu at pennmedicine.upenn.edu>

Citation (from within R, enter citation("iCNV")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iCNV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCNV")
iCNV Vignette HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CopyNumberVariation, ExomeSeq, HiddenMarkovModel, ImmunoOncology, SNP, Software, WholeGenome
Version 1.22.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL-2
Depends R (>= 3.3.1), CODEX
Imports fields, ggplot2, truncnorm, tidyr, data.table, dplyr, grDevices, graphics, stats, utils, rlang
System Requirements
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Suggests knitr, rmarkdown, WES.1KG.WUGSC
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iCNV_1.22.0.tar.gz
Windows Binary iCNV_1.22.0.zip
macOS Binary (x86_64) iCNV_1.22.0.tgz
macOS Binary (arm64) iCNV_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iCNV
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCNV
Bioc Package Browser https://code.bioconductor.org/browse/iCNV/
Package Short Url https://bioconductor.org/packages/iCNV/
Package Downloads Report Download Stats