DOI: 10.18129/B9.bioc.iCNV    

Integrated Copy Number Variation detection

Bioconductor version: Release (3.8)

Integrative copy number variation (CNV) detection from multiple platform and experimental design.

Author: Zilu Zhou, Nancy Zhang

Maintainer: Zilu Zhou <zhouzilu at pennmedicine.upenn.edu>

Citation (from within R, enter citation("iCNV")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("iCNV", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script iCNV Vignette
PDF   Reference Manual
Text   NEWS


biocViews CopyNumberVariation, ExomeSeq, HiddenMarkovModel, ImmunoOncology, SNP, Software, WholeGenome
Version 1.2.1
In Bioconductor since BioC 3.7 (R-3.5) (1 year)
License GPL-2
Depends R (>= 3.3.1), CODEX
Imports fields, ggplot2, truncnorm, tidyr, data.table, dplyr, grDevices, graphics, stats, utils, rlang
Suggests knitr, rmarkdown, WES.1KG.WUGSC
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iCNV_1.2.1.tar.gz
Windows Binary iCNV_1.2.1.zip
Mac OS X 10.11 (El Capitan) iCNV_1.2.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/iCNV
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCNV
Package Short Url http://bioconductor.org/packages/iCNV/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive

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