iCNV

This is the development version of iCNV; for the stable release version, see iCNV.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Integrated Copy Number Variation detection

Bioconductor version: Development (3.24)

Integrative copy number variation (CNV) detection from multiple platform and experimental design.

Author: Zilu Zhou, Nancy Zhang

Maintainer: Zilu Zhou <zhouzilu at pennmedicine.upenn.edu>

Citation (from within R, enter citation("iCNV")):

Zilu Zhou, Nancy Zhang. iCNV: Integrated Copy Number Variation detection. doi:10.18129/B9.bioc.iCNV, R package version 1.33.0, https://bioconductor.org/packages/iCNV.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("iCNV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCNV")

iCNV Vignette	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CopyNumberVariation, ExomeSeq, HiddenMarkovModel, ImmunoOncology, SNP, Software, WholeGenome
Version	1.33.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	GPL-2
Depends	R (>= 3.3.1), CODEX
Imports	fields, ggplot2, truncnorm, tidyr, data.table, dplyr, grDevices, graphics, stats, utils, rlang
System Requirements
URL

Suggests	knitr, rmarkdown, WES.1KG.WUGSC
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iCNV_1.33.0.tar.gz
Windows Binary (x86_64)	iCNV_1.33.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	iCNV_1.33.0.tgz
macOS Binary (sonoma-arm64)	iCNV_1.33.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iCNV
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iCNV
Package Short Url	https://bioconductor.org/packages/iCNV/
Package Downloads Report	Download Stats