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Venn Diagram for genomic interaction data

Bioconductor version: Release (3.19)

A package to generate high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.

Author: Jianhong Ou [aut, cre]

Maintainer: Jianhong Ou <jianhong.ou at>

Citation (from within R, enter citation("hicVennDiagram")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

hicVennDiagram Vignette: overview HTML R Script
Reference Manual PDF


biocViews DNA3DStructure, HiC, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 3.18 (R-4.3) (0.5 years)
License GPL-3
Depends R (>= 4.3.0)
Imports GenomeInfoDb, GenomicRanges, IRanges, InteractionSet, rtracklayer, ggplot2, ComplexUpset, reshape2, eulerr, S4Vectors, methods, utils, htmlwidgets, svglite
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Suggests BiocStyle, knitr, rmarkdown, testthat, ChIPpeakAnno, grid, TxDb.Hsapiens.UCSC.hg38.knownGene
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package hicVennDiagram_1.2.0.tar.gz
Windows Binary
macOS Binary (x86_64) hicVennDiagram_1.2.0.tgz
macOS Binary (arm64) hicVennDiagram_1.2.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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