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This is the development version of hicVennDiagram; for the stable release version, see hicVennDiagram.
Bioconductor version: Development (3.19)
A package to generate high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.
Author: Jianhong Ou [aut, cre]
Maintainer: Jianhong Ou <jianhong.ou at duke.edu>
Citation (from within R,
enter citation("hicVennDiagram")
):
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("hicVennDiagram")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("hicVennDiagram")
HTML | R Script | hicVennDiagram Vignette: overview |
Reference Manual | ||
Text | NEWS |
biocViews | DNA3DStructure, HiC, Software, Visualization |
Version | 1.1.0 |
In Bioconductor since | BioC 3.18 (R-4.3) (< 6 months) |
License | GPL-3 |
Depends | R (>= 4.3.0) |
Imports | InteractionSet, rtracklayer, ggplot2, ComplexUpset, reshape2, eulerr, S4Vectors, methods, utils, htmlwidgets, svglite |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown, testthat, GenomicRanges, ChIPpeakAnno, grid |
SystemRequirements | |
Enhances | |
URL | https://github.com/jianhong/hicVennDiagram |
BugReports | https://github.com/jianhong/hicVennDiagram/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | hicVennDiagram_1.1.0.tar.gz |
Windows Binary | hicVennDiagram_1.1.0.zip (64-bit only) |
macOS Binary (x86_64) | hicVennDiagram_1.1.0.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/hicVennDiagram |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/hicVennDiagram |
Bioc Package Browser | https://code.bioconductor.org/browse/hicVennDiagram/ |
Package Short Url | https://bioconductor.org/packages/hicVennDiagram/ |
Package Downloads Report | Download Stats |
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