gg4way

DOI: 10.18129/B9.bioc.gg4way  

4way Plots of Differential Expression

Bioconductor version: Release (3.18)

4way plots enable a comparison of the logFC values from two contrasts of differential gene expression. The gg4way package creates 4way plots using the ggplot2 framework and supports popular Bioconductor objects. The package also provides information about the correlation between contrasts and significant genes of interest.

Author: Benjamin I Laufer [aut, cre], Brad A Friedman [aut]

Maintainer: Benjamin I Laufer <blaufer at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gg4way")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gg4way")

 

HTML	R Script	gg4way
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DifferentialExpression, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcription, Visualization
Version	1.0.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	MIT + file LICENSE
Depends	R (>= 4.3.0), ggplot2
Imports	DESeq2, dplyr, edgeR, ggrepel, glue, janitor, limma, magrittr, methods, purrr, rlang, scales, stats, stringr, tibble, tidyr
LinkingTo
Suggests	airway, BiocStyle, knitr, org.Hs.eg.db, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/ben-laufer/gg4way
BugReports	https://github.com/ben-laufer/gg4way/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gg4way_1.0.0.tar.gz
Windows Binary	gg4way_1.0.0.zip
macOS Binary (x86_64)	gg4way_1.0.0.tgz
macOS Binary (arm64)	gg4way_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gg4way
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gg4way
Bioc Package Browser	https://code.bioconductor.org/browse/gg4way/
Package Short Url	https://bioconductor.org/packages/gg4way/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.18	Source Archive